There is a concentric bolt that connects the pedal end to the rod that goes into the brake booster. This bolt may have some influence on pedal height, I am not sure. Then there is the plastic stop-cover on the brake light switch, that oftentimes goes missing (due to age it dries out and cracks, falls off etc). It influences pedal height somewhat I believe.
Having said all that, it would seem to me that, if the pedal height was allright before you worked on the brakes, it should be in the same position now. Is the pedal feel spongier than before? This should be cured by the bleeding process, but I would not expect the pedal position to be affected by air in the lines?
Cees Klumper in Amsterdam
'69 white 280 SL automatic