MBA,
You asked what you might have messed up. Well, it's water under the bridge now, but it's generally inadvisable to change so many essential and integral parts of two major systems (fuel and ignition) at the same time. You might end up with, well, what you ended up with.
Winding back the clock, it might have been preferable to first change the cap/and rotor, and ensure they are working fine. Then, go and install the Pertronix (not Pentronix, by the way) system and coil. When you've got that all running, then do the injectors.
When so many things are changed at once, you run a severe risk of having multiple problems simultaneously.
By the way, I installed the Pertronix 1864LA along with the Flamethrower II coil about 5 years ago (051 distributor)--it runs quite well. Idle is as smooth as silk, strong pulling, overall excellent performance. As A. Dalton points out, there's no need for the resistor here. I left mine in place however and simply use one side of the resistor as a tie point.