If you are not experiencing any rattles when driving or when closing the doors - that is fine. But if you do and you want to get rid of them (nothing irritates me more!), then a detailed review of listed items will help.
The whiskers mentioned are important, as written by johnk - I forgot to mention them.
If you happen to be looking at the slides - those orange washers are important there. I think the original ones are not available, but replacements are there.
Sources of rattling I had:
- the big lifter spring
- the smaller door hinge spring
- the upper front little chrome piece
- the slides
- the lock rods (I did not have the plastic sleeves that go in them)
The reasons for not being able to close the window from inside:
- slack in shifters
- backside hard or soft top seal not fitting - required glass adjustment then the seal adjustment in soft top (I have never had an issue of the front seal not fitting, which is stated as the common cause, it was the rear seal in my case)