My suggestion would be to work with ONLY the parts that you changed. Even if it means re-installing all your old parts and then installing the new parts one at a time. While adjusting the valves may be needed, if your engine ran ok before the new alt, spark plug wires, vol reg, etc... it most likely is not what is causing your current issue.
Look closely at all of the areas that you touched to ensure that you didnt disturd anything. The member that is coming over this weekend may be able to help look your engine over and spot what is out of order.... Start with the simple things first.
If you had electrical issues, and your butterfly is openig and closing, maybe disconnect the wires going to the idle switch on the throttle and see if that is the issue.?
Good Luck,
Bob