I realize this is a very old thread, but I'm now facing the same problem. My '64 230 has what I gather is called the version I master cylinder where the front part operates the rear brakes, and the rear part operates the front brakes. It also has only two line attachments ports on the cylinder, and an external Tee fitting branches out to the left and right front brakes. On the later version, the front section of the cylinder operates the front brakes, and the rear part operates the rear brakes - that's just the opposite of the earlier version. Also, the newer one has three ports on the cylinder, with the front left and right lines each attaching directly to the cylinder eliminating the external Tee on the older model.
If I update to the new version, it looks like I will have to also re-do all my brake lines where they come to the master cylinder.
Is there some better trick to this?