Wallace,
I am no expert but I removed my lines in order to remove the injectors and pump. If your injectors could do with a clean, now's the time to do it. It shouldn't cost much but get it done by a pro. Many diesel shops will be able to clean and test them for you if you wanted to go ahead with that.
As for removing the lines, it's very straight forward. What isn't nearly so easy is putting the lines back together again. Take a LOT of photos and measurements. Also, note that - I think I recall - with some engines, the screw that you remove at the end of the engine that also holds the fuel lines holds some of the internal workings in place. So, don't turn over the engine with the bolts out! The fuel in the lines isn't under much pressure, but they hold fuel that will leak all over the place. Someone may be able to recommend a clever way to get around the problem of fuel leaking all over the engine, but I went for spill soil and a drip tray.
In summary, getting them off is easy. Getting them back together again exactly as they were was hard. I took a lot of shots and still had problems.
I can't speak to the contamination issue, but can't imagine for a moment that this form of plating could affect the fuel.
JH