Hello Rob - having read through the thread, some thoughts.
I have had a few intermittent miss / hesitation problems over the years. The causes were:
- spark plug wires
- the spark plugs themselves
- somewhat loose bracket holding one side of the linkage rod going over the valve cover
- an incorrect distributor type
So most of the time, but not always, it was ignition related.
In your situation, I would seriously consider putting in a 123 ignition module; for starters it will eliminate the distributor and ignition settings as possible culprits as the 123 replaces the entire distributor and points. Even if this is not the cause of your problem, the engine will most likely run smoother no matter what else you do. I have found it a very worthwhile upgrade that I did last summer, even though my engine was running fine before the swap. Do make sure the vacuum line that governs the ignition advance is functioning properly because that is one element that the 123 cannot rectify and also depends on. If you have not tested / replaced the coil, that would be another important step, along with testing the wires. The 123 comes with a new cap and rotor. Replace the spark plugs.
I would check, or have RE check, the fuel injection linkages.
Hope this helps!