I agree with Jeff. To enjoy the car, if that is your plan ... You made all the right mods. If you plan to show the car you will loose some points on some of the changes you made. How much can only be answered by a knowlageable judge (perhaps one will reply to your post, we have several that are members here).
If you ever plan to sell, then you may have to wait for someone that likes all the mods you made.
As for value, it may affect it or not all depending on the indevidual and his/her knowlage.
Dieter