Gentlemen, I think she's ready!
I'm not too proud of this bit, but I realized that I set the intake valve clearances at .030, NOT .003. I am very dyslexic, but that's a massive difference! I have never seen one of these cars sound and run as smooth as this one does now, I could not believe how smooth it was. No rattles, taps, shakes, pops, bangs, and you can't even hear the valves at all. I'm sure this is jinxing things, but it runs perfectly now. I also fixed the flow issue with the WRD. Must have been an air bubble, because it politely disappeared when I drained and refilled the cooling system again. It may also have had something to do with the 160 degree thermostat I installed, who knows.
I did a thorough inspection of the friction surfaces, rocker arms, springs, keepers, etc. Everything looked great, this thing barley has break-in miles so it's nice and pretty under the valve cover.
Thanks for all the help guys, I'm sure I'll find more issues to bug you all about in the (near) future!