Jeff,
Lot of good info here. I have the ZF 5 Speed with the 4.08 Euro rear end and I'm not interested in swapping out the rear. I am curious though on the rebuild procedure. I've got a slight rear whine and leak from my pinion seal which I replaced when I had my rear torn down. I did not go as far as you did and did not replace any of the bearings, shims, or crush spacer on the pinion. I did replace almost everything else though, including the axle shaft bearings, seals, differential rubbers, hanger tube, etc. I did not go further in the breakdown because I had seen all the talk about "red rouge" tests and gear spacing in a Chilton's I had and did not want to get into that. I fear now that I may have not got the pre-load correct on the pinion nut and have either overtightened it or undertightened even though I followed the procedure in the Chilton's using a torque wrecnh--I don't think this is very accurate to tell the truth. Questions--did you replace the crush spacer, any of the shims and/or did you run up against any issues with the proper mating of the gears.
George Des